Introduction | Using nbTransmission for modeling | Creating a Dataset of Pairs | Running the unadjusted model | Unadjusted model results | Table of contribution of covariates | Forest plot of contribution of covariates | Identifying significant variables for the adjusted model | Running the adjusted model | Conclusion

Introduction | Creating a Dataset of Pairs | Estimating Relative Transmission Probabilties | Covariates Associated with Probable Transmission | Table of contribution of covariates | Forest plot of contribution of covariates | Finding the Most Likely Infectors | Clustering Illustration | Visualizing Results | Network with all pairs | Network with only top probability pairs | Heatmap with stars on top cluster | Estimating the Reproductive Number | Estimating the Serial Interval | Conclusion